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Related entries of code: 5l9l
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5l9gRCSB PDB    PDBbind351aa, >5L9G_1|Chains... *
5l9iRCSB PDB    PDBbind351aa, >5L9I_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
5l9oRCSB PDB    PDBbindGOP

Entry Information
PDB ID5l9l
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein Nameperiplasmic binding protein (PBP MotA)
Ligand NameGOP
EC.Number E.C.-.-.-.-
Resolution 1.8(Å)
Affinity (Kd/Ki/IC50)Kd=79.4nM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) J.Biol.Chem. Vol. 291: pp. 22638-22649
Ligand Properties
Formula C11H23N2O8
Molecular Weight 311.309
Exact Mass 311.145
No. of atoms 44
No. of bonds 43
Polar Surface Area 198.15
LOGP Value -5.92      (Computed with XLOGP3)
-4.60      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 7
No. of Hydrogen Bond Acceptors: 8
No. of Rotatable Bonds: 15
No. of Nitrogen and Oxygen Atoms: 10
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACNo matched UniProt accession number (AC) found!
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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