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Related entries of code: 5lom
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5l9oRCSB PDB    PDBbind268aa, >5L9O_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
5l9iRCSB PDB    PDBbindSNW

Entry Information
PDB ID5lom
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameAgrobacterium tumefaciens B6 strain PBP SocA
Ligand NameSNW
EC.Number E.C.-.-.-.-
Resolution 1.5(Å)
Affinity (Kd/Ki/IC50)Kd=74.1nM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) J.Biol.Chem. Vol. 291: pp. 22638-22649
Ligand Properties
Formula C11H21N2O8
Molecular Weight 309.293
Exact Mass 309.130
No. of atoms 42
No. of bonds 42
Polar Surface Area 187.15
LOGP Value -5.14      (Computed with XLOGP3)
-4.23      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 6
No. of Hydrogen Bond Acceptors: 7
No. of Rotatable Bonds: 10
No. of Nitrogen and Oxygen Atoms: 10
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q7D447  
Entrez Gene IDNCBI Entrez Gene ID: 56374029  
ASDInformation of known allosteric effects of PDB entries

 
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