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Related entries of code: 5m7u
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5m7sRCSB PDB    PDBbind916aa, >5M7S_1|Chains... *
5m7tRCSB PDB    PDBbind916aa, >5M7T_1|Chains... at 100%
6pm9RCSB PDB    PDBbind388aa, >6PM9_1|Chains... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID5m7u
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameProtein O-GlcNAcase
Ligand NameXHA
EC.Number E.C.3.2.1.169
Resolution 2.3(Å)
Affinity (Kd/Ki/IC50)Ki=8nM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) Nat. Chem. Biol. Vol. 13: pp. 610-612
Ligand Properties
Formula C18H26F3N2O4
Molecular Weight 391.405
Exact Mass 391.184
No. of atoms 53
No. of bonds 54
Polar Surface Area 94.23
LOGP Value 1.25      (Computed with XLOGP3)
1.08      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 5
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 11
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): O60502  
Entrez Gene IDNCBI Entrez Gene ID: 10724  
ASDInformation of known allosteric effects of PDB entries

 
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