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Related entries of code: 5may
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5a6xRCSB PDB    PDBbind114aa, >5A6X_1|Chains... *
5mb1RCSB PDB    PDBbind114aa, >5MB1_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID5may
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameFucose-binding lectin PA-IIL
Ligand NamePK6
EC.Number E.C.-.-.-.-
Resolution 1.65(Å)
Affinity (Kd/Ki/IC50)Kd=0.328uM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2018) J. Am. Chem. Soc. Vol. 140: pp. 2537-2545
Ligand Properties
Formula C11H17NO6S2
Molecular Weight 323.386
Exact Mass 323.050
No. of atoms 37
No. of bonds 38
Polar Surface Area 152.71
LOGP Value -0.28      (Computed with XLOGP3)
0.37      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 7
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): A0A0H2ZE85  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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