Browse entries in the PDBbind-CN Database

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Related entries of code: 5mfr
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2zxgRCSB PDB    PDBbind870aa, >2ZXG_1|Chain... at 100%
3kedRCSB PDB    PDBbind891aa, >3KED_1|Chain... *
4q4eRCSB PDB    PDBbind891aa, >4Q4E_1|Chain... at 100%
4q4iRCSB PDB    PDBbind891aa, >4Q4I_1|Chain... at 100%
5mfsRCSB PDB    PDBbind891aa, >5MFS_1|Chain... at 100%
5mftRCSB PDB    PDBbind891aa, >5MFT_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID5mfr
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameAminopeptidase N
Ligand Name7MK
EC.Number E.C.3.4.11.2
Resolution 1.4(Å)
Affinity (Kd/Ki/IC50)Ki=50000nM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) Proteins Vol. 85: pp. 1413-1421
Ligand Properties
Formula C11H16NO2
Molecular Weight 194.250
Exact Mass 194.118
No. of atoms 30
No. of bonds 31
Polar Surface Area 68.1
LOGP Value 0.31      (Computed with XLOGP3)
-0.53      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 3
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P04825  
Entrez Gene IDNCBI Entrez Gene ID: 947253  
ASDInformation of known allosteric effects of PDB entries

 
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