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Related entries of code: 5mja
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5mjbRCSB PDB    PDBbind305aa, >5MJB_1|Chains... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
5mjbRCSB PDB    PDBbind7O3

Entry Information
PDB ID5mja
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameEphrin type-B receptor 1
Ligand Name7O3
EC.Number E.C.2.7.10.1
Resolution 2.14(Å)
Affinity (Kd/Ki/IC50)IC50=220nM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) ACS Chem. Biol. Vol. 12: pp. 1499-1503
Ligand Properties
Formula C16H12Cl2N4O2
Molecular Weight 363.198
Exact Mass 362.034
No. of atoms 36
No. of bonds 38
Polar Surface Area 87.14
LOGP Value 3.49      (Computed with XLOGP3)
4.06      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 6
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P54762  
Entrez Gene IDNCBI Entrez Gene ID: 2047  
ASDInformation of known allosteric effects of PDB entries

 
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