Browse entries in the PDBbind-CN Database

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Related entries of code: 5ml4
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3t5iRCSB PDB    PDBbind152aa, >3T5I_1|Chains... *
4jv6RCSB PDB    PDBbind152aa, >4JV6_1|Chain... at 100%
4jv8RCSB PDB    PDBbind152aa, >4JV8_1|Chain... at 100%
4jvbRCSB PDB    PDBbind152aa, >4JVB_1|Chain... at 100%
5e80RCSB PDB    PDBbind149aa, >5E80_1|Chains... at 99%
5e8fRCSB PDB    PDBbind149aa, >5E8F_1|Chains... at 100%
5f2uRCSB PDB    PDBbind149aa, >5F2U_1|Chains... at 100%
5ml2RCSB PDB    PDBbind149aa, >5ML2_1|Chain... at 100%
5ml3RCSB PDB    PDBbind149aa, >5ML3_1|Chain... at 100%
5ml6RCSB PDB    PDBbind149aa, >5ML6_1|Chain... at 100%
5ml8RCSB PDB    PDBbind149aa, >5ML8_1|Chain... at 100%
5tarRCSB PDB    PDBbind148aa, >5TAR_2|Chain... at 100%
5x72RCSB PDB    PDBbind150aa, >5X72_1|Chain... at 100%
5x73RCSB PDB    PDBbind150aa, >5X73_1|Chain... at 100%
5x74RCSB PDB    PDBbind150aa, >5X74_1|Chain... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID5ml4
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameRetinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta
Ligand NameRRQ
EC.Number E.C.-.-.-.-
Resolution 2.4(Å)
Affinity (Kd/Ki/IC50)Kd<2nM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) Angew. Chem. Int. Ed. Engl. Vol. 56: pp. 2423-2428
Ligand Properties
Formula C33H42ClN4O6S2
Molecular Weight 690.293
Exact Mass 689.223
No. of atoms 88
No. of bonds 92
Polar Surface Area 157.46
LOGP Value 4.28      (Computed with XLOGP3)
8.18      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 6
No. of Rotatable Bonds: 12
No. of Nitrogen and Oxygen Atoms: 10
No. of Rings: 5
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): O43924  
Entrez Gene IDNCBI Entrez Gene ID: 5147  
ASDInformation of known allosteric effects of PDB entries
 
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