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Related entries of code: 5mmn
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5mmpRCSB PDB    PDBbind234aa, >5MMP_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID5mmn
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameDNA gyrase subunit B
Ligand NameO54
EC.Number E.C.5.99.1.3
Resolution 1.9(Å)
Affinity (Kd/Ki/IC50)IC50<0.2uM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) J. Med. Chem. Vol. 60: pp. 3755-3775
Ligand Properties
Formula C19H20N4O
Molecular Weight 320.388
Exact Mass 320.164
No. of atoms 44
No. of bonds 46
Polar Surface Area 66.91
LOGP Value 3.13      (Computed with XLOGP3)
4.52      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P0AES6  
Entrez Gene IDNCBI Entrez Gene ID: 61752852  948211  
ASDInformation of known allosteric effects of PDB entries

 
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