Browse entries in the PDBbind-CN Database

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Related entries of code: 5n53
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5nzoRCSB PDB    PDBbind195aa, >5NZO_1|Chains... at 100%
5nzpRCSB PDB    PDBbind204aa, >5NZP_1|Chains... at 100%
5nzqRCSB PDB    PDBbind223aa, >5NZQ_1|Chains... at 99%
5ofvRCSB PDB    PDBbind223aa, >5OFV_1|Chains... at 99%
5ofwRCSB PDB    PDBbind223aa, >5OFW_1|Chains... at 99%
6rj6RCSB PDB    PDBbind314aa, >6RJ6_1|Chains... at 100%
6rj5RCSB PDB    PDBbind314aa, >6RJ5_1|Chains... at 100%
6rj3RCSB PDB    PDBbind314aa, >6RJ3_1|Chains... at 100%
6rj2RCSB PDB    PDBbind314aa, >6RJ2_1|Chains... at 100%
6rihRCSB PDB    PDBbind314aa, >6RIH_1|Chains... at 100%
6plgRCSB PDB    PDBbind314aa, >6PLG_1|Chains... at 100%
6plfRCSB PDB    PDBbind314aa, >6PLF_1|Chains... *
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID5n53
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namehuman 3-phosphoglycerate dehydrogenase
Ligand Name8NB
EC.Number E.C.1.1.1.95
Resolution 1.48(Å)
Affinity (Kd/Ki/IC50)Kd=2.8mM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Oncotarget Vol. : pp. -
Ligand Properties
Formula C9H10ClNO2
Molecular Weight 199.634
Exact Mass 199.040
No. of atoms 23
No. of bonds 23
Polar Surface Area 38.33
LOGP Value 1.70      (Computed with XLOGP3)
2.38      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 1
No. of Rotatable Bonds: 3
No. of Nitrogen and Oxygen Atoms: 3
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): O43175  
Entrez Gene IDNCBI Entrez Gene ID: 26227  
ASDInformation of known allosteric effects of PDB entries
 
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