Browse entries in the PDBbind-CN Database

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Related entries of code: 5o5m
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1fmoRCSB PDB    PDBbind20aa, >1FMO_2|Chain... *
1q8tRCSB PDB    PDBbind20aa, >1Q8T_2|Chain... at 100%
1q8uRCSB PDB    PDBbind20aa, >1Q8U_2|Chain... at 100%
1q8wRCSB PDB    PDBbind20aa, >1Q8W_2|Chain... at 100%
1stcRCSB PDB    PDBbind20aa, >1STC_2|Chain... at 100%
1sveRCSB PDB    PDBbind20aa, >1SVE_2|Chain... at 100%
1svgRCSB PDB    PDBbind20aa, >1SVG_2|Chain... at 100%
1svhRCSB PDB    PDBbind20aa, >1SVH_2|Chain... at 100%
1vebRCSB PDB    PDBbind20aa, >1VEB_2|Chain... at 100%
1xh4RCSB PDB    PDBbind20aa, >1XH4_2|Chain... at 100%
1xh5RCSB PDB    PDBbind20aa, >1XH5_2|Chain... at 100%
1xh6RCSB PDB    PDBbind20aa, >1XH6_2|Chain... at 100%
1xh7RCSB PDB    PDBbind20aa, >1XH7_2|Chain... at 100%
1xh8RCSB PDB    PDBbind20aa, >1XH8_2|Chain... at 100%
1xh9RCSB PDB    PDBbind20aa, >1XH9_2|Chain... at 100%
1ydrRCSB PDB    PDBbind20aa, >1YDR_2|Chain... at 100%
1ydsRCSB PDB    PDBbind20aa, >1YDS_2|Chain... at 100%
1ydtRCSB PDB    PDBbind20aa, >1YDT_2|Chain... at 100%
2c1aRCSB PDB    PDBbind20aa, >2C1A_2|Chain... at 100%
2c1bRCSB PDB    PDBbind20aa, >2C1B_2|Chain... at 100%
2cpkRCSB PDB    PDBbind20aa, >2CPK_2|Chain... at 100%
2erzRCSB PDB    PDBbind20aa, >2ERZ_2|Chain... at 100%
2gnfRCSB PDB    PDBbind20aa, >2GNF_2|Chain... at 100%
2gngRCSB PDB    PDBbind20aa, >2GNG_2|Chain... at 100%
2gnhRCSB PDB    PDBbind20aa, >2GNH_2|Chain... at 100%
2gniRCSB PDB    PDBbind20aa, >2GNI_2|Chain... at 100%
2gnjRCSB PDB    PDBbind20aa, >2GNJ_2|Chain... at 100%
2gnlRCSB PDB    PDBbind20aa, >2GNL_2|Chain... at 100%
2gu8RCSB PDB    PDBbind20aa, >2GU8_2|Chain... at 100%
2jdsRCSB PDB    PDBbind20aa, >2JDS_2|Chain... at 100%
2jdtRCSB PDB    PDBbind20aa, >2JDT_2|Chain... at 100%
2jdvRCSB PDB    PDBbind20aa, >2JDV_2|Chain... at 100%
2oh0RCSB PDB    PDBbind20aa, >2OH0_2|Chain... at 100%
2ojfRCSB PDB    PDBbind20aa, >2OJF_2|Chain... at 100%
2qurRCSB PDB    PDBbind20aa, >2QUR_2|Chain... at 100%
2uw0RCSB PDB    PDBbind20aa, >2UW0_2|Chain... at 100%
2uw3RCSB PDB    PDBbind20aa, >2UW3_2|Chain... at 100%
2uw4RCSB PDB    PDBbind20aa, >2UW4_2|Chain... at 100%
2uw5RCSB PDB    PDBbind20aa, >2UW5_2|Chain... at 100%
2uw6RCSB PDB    PDBbind20aa, >2UW6_2|Chain... at 100%
2uw7RCSB PDB    PDBbind20aa, >2UW7_2|Chain... at 100%
2uw8RCSB PDB    PDBbind20aa, >2UW8_2|Chain... at 100%
2uzvRCSB PDB    PDBbind20aa, >2UZV_1|Chain... at 100%
2vo7RCSB PDB    PDBbind20aa, >2VO7_2|Chain... at 100%
3amaRCSB PDB    PDBbind20aa, >3AMA_2|Chain... at 100%
3ambRCSB PDB    PDBbind20aa, >3AMB_2|Chain... at 100%
3dndRCSB PDB    PDBbind20aa, >3DND_2|Chain... at 100%
3dneRCSB PDB    PDBbind20aa, >3DNE_2|Chain... at 100%
3l9lRCSB PDB    PDBbind20aa, >3L9L_2|Chains... at 100%
3l9mRCSB PDB    PDBbind20aa, >3L9M_2|Chains... at 100%
3l9nRCSB PDB    PDBbind20aa, >3L9N_2|Chain... at 100%
3mvjRCSB PDB    PDBbind20aa, >3MVJ_2|Chains... at 100%
3ow3RCSB PDB    PDBbind20aa, >3OW3_2|Chain... at 100%
3vqhRCSB PDB    PDBbind20aa, >3VQH_2|Chain... at 100%
3zo1RCSB PDB    PDBbind18aa, >3ZO1_2|Chain... at 100%
3zo2RCSB PDB    PDBbind20aa, >3ZO2_2|Chain... at 100%
3zo4RCSB PDB    PDBbind20aa, >3ZO4_2|Chain... at 100%
4axaRCSB PDB    PDBbind20aa, >4AXA_2|Chain... at 100%
4c35RCSB PDB    PDBbind18aa, >4C35_2|Chain... at 100%
4c36RCSB PDB    PDBbind20aa, >4C36_2|Chain... at 100%
4c37RCSB PDB    PDBbind20aa, >4C37_2|Chain... at 100%
4c38RCSB PDB    PDBbind20aa, >4C38_2|Chain... at 100%
4uj1RCSB PDB    PDBbind20aa, >4UJ1_2|Chain... at 100%
4uj2RCSB PDB    PDBbind20aa, >4UJ2_2|Chain... at 100%
4uj9RCSB PDB    PDBbind20aa, >4UJ9_2|Chain... at 100%
4ujaRCSB PDB    PDBbind20aa, >4UJA_2|Chain... at 100%
4ujbRCSB PDB    PDBbind20aa, >4UJB_2|Chain... at 100%
4z83RCSB PDB    PDBbind20aa, >4Z83_2|Chain... at 100%
4z84RCSB PDB    PDBbind20aa, >4Z84_2|Chain... at 100%
5uzkRCSB PDB    PDBbind18aa, >5UZK_2|Chain... at 100%
6e99RCSB PDB    PDBbind18aa, >6E99_2|Chain... at 100%
6e9lRCSB PDB    PDBbind18aa, >6E9L_2|Chain... at 100%
6esaRCSB PDB    PDBbind18aa, >6ESA_2|Chain... at 94%
6erwRCSB PDB    PDBbind18aa, >6ERW_2|Chain... at 100%
6ervRCSB PDB    PDBbind18aa, >6ERV_2|Chain... at 100%
6eruRCSB PDB    PDBbind18aa, >6ERU_2|Chain... at 94%
6ertRCSB PDB    PDBbind18aa, >6ERT_2|Chain... at 94%
6em7RCSB PDB    PDBbind18aa, >6EM7_2|Chain... at 94%
6em6RCSB PDB    PDBbind18aa, >6EM6_2|Chain... at 94%
6eh2RCSB PDB    PDBbind18aa, >6EH2_2|Chain... at 94%
6egwRCSB PDB    PDBbind18aa, >6EGW_2|Chain... at 100%
5ousRCSB PDB    PDBbind18aa, >5OUS_2|Chain... at 94%
5ouaRCSB PDB    PDBbind18aa, >5OUA_2|Chain... at 100%
5ot3RCSB PDB    PDBbind18aa, >5OT3_2|Chain... at 94%
5ol3RCSB PDB    PDBbind18aa, >5OL3_2|Chain... at 100%
5ok3RCSB PDB    PDBbind18aa, >5OK3_2|Chain... at 94%
5o0eRCSB PDB    PDBbind18aa, >5O0E_2|Chain... at 94%
5nw8RCSB PDB    PDBbind18aa, >5NW8_2|Chain... at 94%
6emaRCSB PDB    PDBbind18aa, >6EMA_2|Chain... at 94%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID5o5m
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NamecAMP-dependent protein kinase catalytic subunit alpha
Ligand Name18-mer, 9LQ
EC.Number E.C.2.7.11.11
Resolution 1.58(Å)
Affinity (Kd/Ki/IC50)Kd=29.6uM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2019) Acs Omega Vol. : pp. -
Ligand Properties
Formula C21H26BN3O4S
Molecular Weight 427.325
Exact Mass 427.174
No. of atoms 56
No. of bonds 59
Polar Surface Area 92.55
LOGP Value 1.82      (Computed with XLOGP3)
1.71      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 6
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P25321  G3HK48  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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