Browse entries in the PDBbind-CN Database

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Related entries of code: 5o9y
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5o9oRCSB PDB    PDBbind555aa, >5O9O_1|Chain... *
5o9pRCSB PDB    PDBbind555aa, >5O9P_1|Chain... at 100%
5o9qRCSB PDB    PDBbind555aa, >5O9Q_1|Chain... at 100%
5o9rRCSB PDB    PDBbind555aa, >5O9R_1|Chain... at 100%
5oa2RCSB PDB    PDBbind555aa, >5OA2_1|Chains... at 100%
5oa6RCSB PDB    PDBbind555aa, >5OA6_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID5o9y
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein Name1,3-beta-glucanosyltransferase GAS2
Ligand Name9PN
EC.Number E.C.2.4.1.-
Resolution 1.57(Å)
Affinity (Kd/Ki/IC50)Kd=4.60uM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) ChemMedChem Vol. 13: pp. 128-132
Ligand Properties
Formula C28H44N4O15
Molecular Weight 676.667
Exact Mass 676.280
No. of atoms 91
No. of bonds 95
Polar Surface Area 282.4
LOGP Value -4.02      (Computed with XLOGP3)
-5.85      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 10
No. of Hydrogen Bond Acceptors: 12
No. of Rotatable Bonds: 22
No. of Nitrogen and Oxygen Atoms: 19
No. of Rings: 5
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q06135  
Entrez Gene IDNCBI Entrez Gene ID: 851056  
ASDInformation of known allosteric effects of PDB entries

 
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