Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 5obg
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2byrRCSB PDB    PDBbind227aa, >2BYR_1|Chains... at 95%
2bysRCSB PDB    PDBbind227aa, >2BYS_1|Chains... at 95%
2pgzRCSB PDB    PDBbind230aa, >2PGZ_1|Chains... at 94%
2ph9RCSB PDB    PDBbind230aa, >2PH9_1|Chains... at 94%
2w8fRCSB PDB    PDBbind217aa, >2W8F_1|Chains... at 100%
2w8gRCSB PDB    PDBbind217aa, >2W8G_1|Chains... at 100%
2wn9RCSB PDB    PDBbind228aa, >2WN9_1|Chains... at 95%
2wncRCSB PDB    PDBbind227aa, >2WNC_1|Chains... at 95%
2wnjRCSB PDB    PDBbind228aa, >2WNJ_1|Chains... at 95%
2wnlRCSB PDB    PDBbind227aa, >2WNL_1|Chains... at 95%
2wzyRCSB PDB    PDBbind228aa, >2WZY_1|Chains... at 95%
2x00RCSB PDB    PDBbind227aa, >2X00_2|Chain... at 95%
2xysRCSB PDB    PDBbind217aa, >2XYS_1|Chains... at 100%
2xytRCSB PDB    PDBbind217aa, >2XYT_1|Chains... at 100%
2xz5RCSB PDB    PDBbind217aa, >2XZ5_1|Chains... at 99%
2y54RCSB PDB    PDBbind217aa, >2Y54_1|Chains... at 100%
2y56RCSB PDB    PDBbind217aa, >2Y56_1|Chains... at 100%
2y57RCSB PDB    PDBbind217aa, >2Y57_1|Chains... at 100%
2y58RCSB PDB    PDBbind217aa, >2Y58_1|Chains... at 100%
2ymdRCSB PDB    PDBbind212aa, >2YMD_1|Chains... at 98%
2ymeRCSB PDB    PDBbind205aa, >2YME_1|Chains... at 99%
3c79RCSB PDB    PDBbind227aa, >3C79_1|Chains... at 95%
3c84RCSB PDB    PDBbind227aa, >3C84_1|Chains... at 95%
4aftRCSB PDB    PDBbind217aa, >4AFT_1|Chains... at 100%
4bqtRCSB PDB    PDBbind217aa, >4BQT_1|Chains... at 100%
4dbmRCSB PDB    PDBbind230aa, >4DBM_1|Chains... at 94%
4xheRCSB PDB    PDBbind217aa, >4XHE_1|Chains... at 94%
4xk9RCSB PDB    PDBbind228aa, >4XK9_1|Chains... at 95%
5lxbRCSB PDB    PDBbind242aa, >5LXB_1|Chains... at 99%
5oajRCSB PDB    PDBbind249aa, >5OAJ_1|Chains... at 97%
5o8tRCSB PDB    PDBbind249aa, >5O8T_1|Chains... at 100%
5o87RCSB PDB    PDBbind249aa, >5O87_1|Chains... *
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
2xysRCSB PDB    PDBbindSY9
5cfbRCSB PDB    PDBbindSY9
5o8tRCSB PDB    PDBbindSY9
Entry Information
PDB ID5obg
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameSoluble acetylcholine receptor
Ligand NameSY9
EC.Number E.C.-.-.-.-
Resolution 2(Å)
Affinity (Kd/Ki/IC50)Kd=74.1nM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2019) Iucrj Vol. 6: pp. 1014-1023
Ligand Properties
Formula C21H23N2O2
Molecular Weight 335.420
Exact Mass 335.176
No. of atoms 48
No. of bonds 54
Polar Surface Area 33.98
LOGP Value 1.04      (Computed with XLOGP3)
2.31      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 1
No. of Rotatable Bonds: 0
No. of Nitrogen and Oxygen Atoms: 4
No. of Rings: 7
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q8WSF8  
Entrez Gene IDNCBI Entrez Gene ID: 100533247  
ASDInformation of known allosteric effects of PDB entries
 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝ｅ湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com