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Related entries of code: 5odu
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5ofiRCSB PDB    PDBbind122aa, >5OFI_1|Chains... at 100%
5ofxRCSB PDB    PDBbind122aa, >5OFX_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
4nduRCSB PDB    PDBbindAMG
Entry Information
PDB ID5odu
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NamePllA
Ligand NameAMG
EC.Number E.C.-.-.-.-
Resolution 1.56(Å)
Affinity (Kd/Ki/IC50)IC50=0.52mM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) J. Biol. Chem. Vol. 292: pp. 19935-19951
Ligand Properties
Formula C7H14O6
Molecular Weight 194.182
Exact Mass 194.079
No. of atoms 27
No. of bonds 27
Polar Surface Area 99.38
LOGP Value -2.05      (Computed with XLOGP3)
-2.57      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 6
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q7N561  
Entrez Gene IDNCBI Entrez Gene ID: 24166541  
ASDInformation of known allosteric effects of PDB entries
 
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