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Related entries of code: 5ogl
Entries with 90% protein sequence similarity cutoff in PDBbind
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No similar entries are found!
Complexes with the same small molecule ligand
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No complexes with the same small molecule ligand are found!
Entry Information
PDB ID5ogl
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameUndecaprenyl-diphosphooligosaccharide--protein glycotransferase
Ligand Name9UB
EC.Number E.C.2.4.99.19
Resolution 2.7(Å)
Affinity (Kd/Ki/IC50)Kd=48.5uM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) Nat. Struct. Mol. Biol. Vol. 24: pp. 1100-1106
Ligand Properties
Formula C29H53NO11P2
Molecular Weight 653.679
Exact Mass 653.309
No. of atoms 96
No. of bonds 96
Polar Surface Area 225.58
LOGP Value 2.52      (Computed with XLOGP3)
3.95      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 8
No. of Rotatable Bonds: 22
No. of Nitrogen and Oxygen Atoms: 12
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): B9KDD4  
Entrez Gene IDNCBI Entrez Gene ID: 7410986  
ASDInformation of known allosteric effects of PDB entries
 
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