Browse entries in the PDBbind-CN Database

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Related entries of code: 5oku
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5oeiRCSB PDB    PDBbind334aa, >5OEI_1|Chain... *
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID5oku
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameUncharacterized protein family UPF0065:Tat pathway signal
Ligand Name0L1
EC.Number E.C.-.-.-.-
Resolution 2.07(Å)
Affinity (Kd/Ki/IC50)Kd=0.55uM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) FEBS J. Vol. 284: pp. 4262-4277
Ligand Properties
Formula C6H10O4
Molecular Weight 146.141
Exact Mass 146.058
No. of atoms 20
No. of bonds 19
Polar Surface Area 74.6
LOGP Value 2.82      (Computed with XLOGP3)
0.72      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 0
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 3
No. of Nitrogen and Oxygen Atoms: 4
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q6N193  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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