Browse entries in the PDBbind-CN Database

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Related entries of code: 5orb
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4ir5RCSB PDB    PDBbind117aa, >4IR5_1|Chain... *
4ir6RCSB PDB    PDBbind117aa, >4IR6_1|Chain... at 100%
4nraRCSB PDB    PDBbind117aa, >4NRA_1|Chain... at 100%
4nrbRCSB PDB    PDBbind117aa, >4NRB_1|Chain... at 100%
4nrcRCSB PDB    PDBbind117aa, >4NRC_1|Chain... at 100%
4qc1RCSB PDB    PDBbind107aa, >4QC1_1|Chains... at 98%
4rvrRCSB PDB    PDBbind117aa, >4RVR_1|Chain... at 100%
4xuaRCSB PDB    PDBbind117aa, >4XUA_1|Chain... at 100%
4xubRCSB PDB    PDBbind117aa, >4XUB_1|Chain... at 100%
5e73RCSB PDB    PDBbind116aa, >5E73_1|Chain... at 100%
5e74RCSB PDB    PDBbind116aa, >5E74_1|Chain... at 100%
5l8tRCSB PDB    PDBbind116aa, >5L8T_1|Chain... at 100%
5l96RCSB PDB    PDBbind116aa, >5L96_1|Chain... at 100%
5l97RCSB PDB    PDBbind116aa, >5L97_1|Chain... at 100%
5l98RCSB PDB    PDBbind116aa, >5L98_1|Chain... at 100%
5l99RCSB PDB    PDBbind116aa, >5L99_1|Chain... at 100%
5mgeRCSB PDB    PDBbind116aa, >5MGE_1|Chain... at 100%
5mgfRCSB PDB    PDBbind116aa, >5MGF_1|Chain... at 100%
5mggRCSB PDB    PDBbind116aa, >5MGG_1|Chain... at 100%
5or9RCSB PDB    PDBbind117aa, >5OR9_1|Chain... at 100%
6fh6RCSB PDB    PDBbind117aa, >6FH6_1|Chain... at 100%
6fh7RCSB PDB    PDBbind117aa, >6FH7_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID5orb
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameBromodomain adjacent to zinc finger domain protein 2B
Ligand NameJR6
EC.Number E.C.-.-.-.-
Resolution 2.1(Å)
Affinity (Kd/Ki/IC50)IC50>51uM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) J Chem Inf Model Vol. 57: pp. 2584-2597
Ligand Properties
Formula C16H19N3O2S
Molecular Weight 317.406
Exact Mass 317.120
No. of atoms 41
No. of bonds 43
Polar Surface Area 81.45
LOGP Value 2.64      (Computed with XLOGP3)
2.72      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 6
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9UIF8  
Entrez Gene IDNCBI Entrez Gene ID: 29994  
ASDInformation of known allosteric effects of PDB entries

 
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