Browse entries in the PDBbind-CN Database

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Related entries of code: 5org
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
No similar entries are found!
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
5itoRCSB PDB    PDBbind6DB
5itpRCSB PDB    PDBbind6DB
5ot8RCSB PDB    PDBbind6DB

Entry Information
PDB ID5org
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameOctopine-binding periplasmic protein
Ligand Name6DB
EC.Number E.C.-.-.-.-
Resolution 1.99(Å)
Affinity (Kd/Ki/IC50)Kd=0.004uM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) Sci Rep Vol. 7: pp. 18033-18033
Ligand Properties
Formula C9H20N4O4
Molecular Weight 248.279
Exact Mass 248.148
No. of atoms 37
No. of bonds 36
Polar Surface Area 157.22
LOGP Value 0.18      (Computed with XLOGP3)
-2.99      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 6
No. of Nitrogen and Oxygen Atoms: 8
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P0A4F8  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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