Browse entries in the PDBbind-CN Database

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Related entries of code: 5tl9
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4yk5RCSB PDB    PDBbind154aa, >4YK5_1|Chain... *
4yl0RCSB PDB    PDBbind148aa, >4YL0_1|Chain... at 100%
4yl1RCSB PDB    PDBbind148aa, >4YL1_1|Chain... at 100%
4yl3RCSB PDB    PDBbind148aa, >4YL3_1|Chain... at 100%
5bqgRCSB PDB    PDBbind154aa, >5BQG_1|Chain... at 98%
5bqhRCSB PDB    PDBbind154aa, >5BQH_1|Chain... at 98%
5bqiRCSB PDB    PDBbind154aa, >5BQI_1|Chain... at 98%
5k0iRCSB PDB    PDBbind154aa, >5K0I_1|Chain... at 98%
5t36RCSB PDB    PDBbind154aa, >5T36_1|Chain... at 98%
5t37RCSB PDB    PDBbind154aa, >5T37_1|Chain... at 98%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID5tl9
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namemicrosomal prostaglandin E synthase-1
Ligand Name7DN
EC.Number E.C.5.3.99.3
Resolution 1.2(Å)
Affinity (Kd/Ki/IC50)IC50=1nM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) Bioorg. Med. Chem. Lett. Vol. 27: pp. 1478-1483
Ligand Properties
Formula C30H35N3O3
Molecular Weight 485.617
Exact Mass 485.268
No. of atoms 71
No. of bonds 75
Polar Surface Area 82.53
LOGP Value 6.87      (Computed with XLOGP3)
5.83      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 7
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 5
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): O14684  
Entrez Gene IDNCBI Entrez Gene ID: 9536  
ASDInformation of known allosteric effects of PDB entries
 
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