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Related entries of code: 5tmp
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4tmkRCSB PDB    PDBbind213aa, >4TMK_1|Chain... *
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID5tmp
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein Namethymidylate kinase
Ligand NameZ5A
EC.Number E.C.2.7.4.9
Resolution 1.98(Å)
Affinity (Kd/Ki/IC50)Kd=34nM
Release Year1998
Protein/NA SequenceCheck fasta file
Primary Reference Proc.Natl.Acad.Sci.USA v95 pp. 14045-50, 1998
Ligand Properties
Formula C20H34N10O22P5
Molecular Weight 921.407
Exact Mass 921.054
No. of atoms 91
No. of bonds 95
Polar Surface Area 558.78
LOGP Value -7.29      (Computed with XLOGP3)
-2.70      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 17
No. of Rotatable Bonds: 19
No. of Nitrogen and Oxygen Atoms: 32
No. of Rings: 5
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P0A720  
Entrez Gene IDNCBI Entrez Gene ID: 61755199  945663  
ASDInformation of known allosteric effects of PDB entries

 
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