Browse entries in the PDBbind-CN Database

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Related entries of code: 5tob
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3et7RCSB PDB    PDBbind277aa, >3ET7_1|Chain... at 100%
3fzrRCSB PDB    PDBbind277aa, >3FZR_1|Chain... at 100%
3fzsRCSB PDB    PDBbind277aa, >3FZS_1|Chain... at 100%
3fztRCSB PDB    PDBbind277aa, >3FZT_1|Chain... at 100%
3h3cRCSB PDB    PDBbind277aa, >3H3C_1|Chain... at 100%
4h1jRCSB PDB    PDBbind293aa, >4H1J_1|Chain... *
4h1mRCSB PDB    PDBbind293aa, >4H1M_1|Chain... at 100%
5to8RCSB PDB    PDBbind282aa, >5TO8_1|Chain... at 98%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
3bz3RCSB PDB    PDBbindYAM
5x4oRCSB PDB    PDBbindYAM

Entry Information
PDB ID5tob
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameProtein-tyrosine kinase 2-beta
Ligand NameYAM
EC.Number E.C.-.-.-.-
Resolution 2.12(Å)
Affinity (Kd/Ki/IC50)IC50=1.5nM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Bioorg. Med. Chem. Lett. Vol. 26: pp. 5926-5930
Ligand Properties
Formula C21H20F3N7O3S
Molecular Weight 507.489
Exact Mass 507.130
No. of atoms 55
No. of bonds 58
Polar Surface Area 137.59
LOGP Value 2.04      (Computed with XLOGP3)
4.50      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 6
No. of Rotatable Bonds: 7
No. of Nitrogen and Oxygen Atoms: 10
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q14289  
Entrez Gene IDNCBI Entrez Gene ID: 2185  
ASDInformation of known allosteric effects of PDB entries

 
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