Browse entries in the PDBbind-CN Database

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Related entries of code: 5trr
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3krdRCSB PDB    PDBbind240aa, >3KRD_2|Chains... *
5thoRCSB PDB    PDBbind240aa, >5THO_2|Chains... at 100%
5trgRCSB PDB    PDBbind240aa, >5TRG_2|Chains... at 100%
5trsRCSB PDB    PDBbind240aa, >5TRS_2|Chains... at 100%
5tryRCSB PDB    PDBbind240aa, >5TRY_2|Chains... at 100%
5ts0RCSB PDB    PDBbind240aa, >5TS0_2|Chains... at 100%
6odeRCSB PDB    PDBbind234aa, >6ODE_2|Chains... at 100%
6oczRCSB PDB    PDBbind234aa, >6OCZ_2|Chains... at 100%
6ocwRCSB PDB    PDBbind234aa, >6OCW_2|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID5trr
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Name20S proteasome
Ligand Name7HY
EC.Number E.C.-.-.-.-
Resolution 3.1(Å)
Affinity (Kd/Ki/IC50)IC50=0.041uM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) Biochemistry Vol. 56: pp. 324-333
Ligand Properties
Formula C31H38N4O4
Molecular Weight 530.658
Exact Mass 530.289
No. of atoms 77
No. of bonds 79
Polar Surface Area 107.61
LOGP Value 3.47      (Computed with XLOGP3)
4.51      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 17
No. of Nitrogen and Oxygen Atoms: 8
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P9WHT9  P9WHU1  
Entrez Gene IDNCBI Entrez Gene ID: 887508  887538  
ASDInformation of known allosteric effects of PDB entries

 
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