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Related entries of code: 5ugd
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5uggRCSB PDB    PDBbind251aa, >5UGG_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID5ugd
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NamePlasminogen
Ligand Name89S
EC.Number E.C.-.-.-.-
Resolution 1.38(Å)
Affinity (Kd/Ki/IC50)IC50=0.24uM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) Blood Adv Vol. 1: pp. 766-771
Ligand Properties
Formula C31H47N4O3
Molecular Weight 523.730
Exact Mass 523.365
No. of atoms 85
No. of bonds 87
Polar Surface Area 107.96
LOGP Value 5.18      (Computed with XLOGP3)
4.99      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 18
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P00747  
Entrez Gene IDNCBI Entrez Gene ID: 5340  
ASDInformation of known allosteric effects of PDB entries

 
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