Browse entries in the PDBbind-CN Database

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Related entries of code: 5up3
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3vw6RCSB PDB    PDBbind269aa, >3VW6_1|Chains... at 99%
4bhnRCSB PDB    PDBbind334aa, >4BHN_1|Chains... *
4bibRCSB PDB    PDBbind318aa, >4BIB_1|Chains... at 100%
4bicRCSB PDB    PDBbind318aa, >4BIC_1|Chains... at 100%
4bidRCSB PDB    PDBbind318aa, >4BID_1|Chains... at 100%
4bieRCSB PDB    PDBbind318aa, >4BIE_1|Chains... at 100%
5uorRCSB PDB    PDBbind270aa, >5UOR_1|Chains... at 99%
5uoxRCSB PDB    PDBbind271aa, >5UOX_1|Chains... at 99%
5v19RCSB PDB    PDBbind271aa, >5V19_1|Chains... at 99%
5v24RCSB PDB    PDBbind271aa, >5V24_1|Chains... at 99%
5vilRCSB PDB    PDBbind293aa, >5VIL_1|Chains... at 99%
5vioRCSB PDB    PDBbind293aa, >5VIO_1|Chains... at 99%
6e2mRCSB PDB    PDBbind295aa, >6E2M_1|Chains... at 98%
6e2nRCSB PDB    PDBbind295aa, >6E2N_1|Chains... at 98%
6e2oRCSB PDB    PDBbind295aa, >6E2O_1|Chains... at 98%
6oywRCSB PDB    PDBbind294aa, >6OYW_1|Chains... at 99%
6oytRCSB PDB    PDBbind280aa, >6OYT_1|Chains... at 97%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID5up3
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameMitogen-activated protein kinase kinase kinase 5
Ligand Name8GS
EC.Number E.C.-.-.-.-
Resolution 2.95(Å)
Affinity (Kd/Ki/IC50)IC50=12.59nM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) ACS Med Chem Lett Vol. 8: pp. 316-320
Ligand Properties
Formula C18H17N5O
Molecular Weight 319.360
Exact Mass 319.143
No. of atoms 41
No. of bonds 44
Polar Surface Area 63.91
LOGP Value 1.68      (Computed with XLOGP3)
3.15      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 0
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 3
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q99683  
Entrez Gene IDNCBI Entrez Gene ID: 4217  
ASDInformation of known allosteric effects of PDB entries
 
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