Browse entries in the PDBbind-CN Database

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Related entries of code: 5usf
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
No similar entries are found!
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
6i5yRCSB PDB    PDBbindYSA

Entry Information
PDB ID5usf
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Nametyrosyl-tRNA synthetase
Ligand NameYSA
EC.Number E.C.-.-.-.-
Resolution 2.75(Å)
Affinity (Kd/Ki/IC50)IC50=0.69nM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) Biochimie Vol. 138: pp. 124-136
Ligand Properties
Formula C19H24N7O8S
Molecular Weight 510.501
Exact Mass 510.141
No. of atoms 59
No. of bonds 62
Polar Surface Area 248.03
LOGP Value -2.12      (Computed with XLOGP3)
-0.98      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 6
No. of Hydrogen Bond Acceptors: 9
No. of Rotatable Bonds: 12
No. of Nitrogen and Oxygen Atoms: 15
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): E9BC28  
Entrez Gene IDNCBI Entrez Gene ID: 13392880  
ASDInformation of known allosteric effects of PDB entries

 
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