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Related entries of code: 5v37
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5cclRCSB PDB    PDBbind432aa, >5CCL_1|Chain... *
5ccmRCSB PDB    PDBbind428aa, >5CCM_1|Chain... at 100%
5hi7RCSB PDB    PDBbind432aa, >5HI7_1|Chain... at 99%
6ijlRCSB PDB    PDBbind428aa, >6IJL_1|Chain... at 99%
5yjoRCSB PDB    PDBbind423aa, >5YJO_1|Chain... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID5v37
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameHistone-lysine N-methyltransferase SMYD3
Ligand Name8WD
EC.Number E.C.-.-.-.-
Resolution 1.42(Å)
Affinity (Kd/Ki/IC50)Kd=0.34nM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) Plos One Vol. 13: pp. e0197372-e0197372
Ligand Properties
Formula C20H31N4O4S
Molecular Weight 423.550
Exact Mass 423.207
No. of atoms 60
No. of bonds 64
Polar Surface Area 128.53
LOGP Value 1.41      (Computed with XLOGP3)
2.57      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 6
No. of Nitrogen and Oxygen Atoms: 8
No. of Rings: 5
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9H7B4  
Entrez Gene IDNCBI Entrez Gene ID: 64754  
ASDInformation of known allosteric effects of PDB entries

 
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