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Related entries of code: 5v8o
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
6nfgRCSB PDB    PDBbind362aa, >6NFG_1|Chains... at 99%
6nfoRCSB PDB    PDBbind362aa, >6NFO_1|Chains... at 99%
5vdoRCSB PDB    PDBbind363aa, >5VDO_1|Chains... at 99%
5vdpRCSB PDB    PDBbind363aa, >5VDP_1|Chains... at 99%
5vdqRCSB PDB    PDBbind363aa, >5VDQ_1|Chains... at 99%
5vdrRCSB PDB    PDBbind363aa, >5VDR_1|Chains... at 99%
5vdsRCSB PDB    PDBbind363aa, >5VDS_1|Chains... at 99%
5vdtRCSB PDB    PDBbind363aa, >5VDT_1|Chains... at 99%
5vduRCSB PDB    PDBbind363aa, >5VDU_1|Chains... at 99%
5vdvRCSB PDB    PDBbind363aa, >5VDV_1|Chains... at 99%
5vdwRCSB PDB    PDBbind363aa, >5VDW_1|Chains... at 99%
6naoRCSB PDB    PDBbind362aa, >6NAO_1|Chains... at 99%
6mjuRCSB PDB    PDBbind372aa, >6MJU_1|Chain... *
6mjwRCSB PDB    PDBbind372aa, >6MJW_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID5v8o
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameCyclic GMP-AMP synthase
Ligand Name8ZM
EC.Number E.C.-.-.-.-
Resolution 3.1(Å)
Affinity (Kd/Ki/IC50)Kd=171uM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) PLoS ONE Vol. 12: pp. e0184843-e0184843
Ligand Properties
Formula C10H7N5O
Molecular Weight 213.195
Exact Mass 213.065
No. of atoms 23
No. of bonds 25
Polar Surface Area 75.94
LOGP Value 1.44      (Computed with XLOGP3)
0.48      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 1
No. of Rotatable Bonds: 1
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q8N884  
Entrez Gene IDNCBI Entrez Gene ID: 115004  
ASDInformation of known allosteric effects of PDB entries
 
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