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Related entries of code: 5v9t
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5cehRCSB PDB    PDBbind790aa, >5CEH:A|PDBID|CHAIN|... *
5k4lRCSB PDB    PDBbind790aa, >5K4L:B|PDBID|CHAIN|... at 100%
5v9pRCSB PDB    PDBbind790aa, >5V9P:A|PDBID|CHAIN|... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
6bh2RCSB PDB    PDBbind90V

Entry Information
PDB ID5v9t
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameLysine-specific demethylase 5A
Ligand Name90V
EC.Number E.C.-.-.-.-
Resolution 3.05(Å)
Affinity (Kd/Ki/IC50)IC50=45nM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) Bioorg. Med. Chem. Lett. Vol. 27: pp. 2974-2981
Ligand Properties
Formula C15H22N4O2
Molecular Weight 290.361
Exact Mass 290.174
No. of atoms 43
No. of bonds 45
Polar Surface Area 78.09
LOGP Value 1.14      (Computed with XLOGP3)
1.60      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 6
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P29375  
Entrez Gene IDNCBI Entrez Gene ID: 5927  
ASDInformation of known allosteric effects of PDB entries

 
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