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Related entries of code: 5vfm
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4yv5RCSB PDB    PDBbind122aa, >4YV5_1|Chains... *
5vfjRCSB PDB    PDBbind121aa, >5VFJ_1|Chains... at 95%
5vfnRCSB PDB    PDBbind121aa, >5VFN_1|Chains... at 95%
6dikRCSB PDB    PDBbind121aa, >6DIK_1|Chains... at 95%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
4f8jRCSB PDB    PDBbindHC4
4qemRCSB PDB    PDBbindHC4
5x13RCSB PDB    PDBbindHC4
Entry Information
PDB ID5vfm
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameBasic phospholipase A2 homolog BnSP-7
Ligand NameHC4
EC.Number E.C.-.-.-.-
Resolution 2.06(Å)
Affinity (Kd/Ki/IC50)Kd=150uM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) Biochimie Vol. 142: pp. 11-21
Ligand Properties
Formula C9H8O3
Molecular Weight 164.158
Exact Mass 164.047
No. of atoms 20
No. of bonds 20
Polar Surface Area 57.53
LOGP Value 2.82      (Computed with XLOGP3)
1.49      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 3
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9IAT9  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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