Browse entries in the PDBbind-CN Database

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Related entries of code: 5vm6
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
No similar entries are found!
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
5vl2RCSB PDB    PDBbind9EG
5vm0RCSB PDB    PDBbind9EG

Entry Information
PDB ID5vm6
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namesingle domain camelid nanobody VHH T10
Ligand Name9EG
EC.Number E.C.-.-.-.-
Resolution 1.5(Å)
Affinity (Kd/Ki/IC50)IC50=78nM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2019) J. Mol. Recognit. Vol. 32: pp. e2755-e2755
Ligand Properties
Formula C13H9Cl3N2O
Molecular Weight 315.582
Exact Mass 313.978
No. of atoms 28
No. of bonds 29
Polar Surface Area 41.13
LOGP Value 4.37      (Computed with XLOGP3)
5.44      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 1
No. of Rotatable Bonds: 4
No. of Nitrogen and Oxygen Atoms: 3
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACNo matched UniProt accession number (AC) found!
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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