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Related entries of code: 5vsd
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3fpdRCSB PDB    PDBbind261aa, >3FPD_1|Chains... at 100%
3mo0RCSB PDB    PDBbind285aa, >3MO0_1|Chains... at 100%
3mo2RCSB PDB    PDBbind285aa, >3MO2_1|Chains... at 100%
3mo5RCSB PDB    PDBbind285aa, >3MO5_1|Chains... at 100%
5ttgRCSB PDB    PDBbind287aa, >5TTG_1|Chains... *
5tuzRCSB PDB    PDBbind261aa, >5TUZ_1|Chains... at 100%
5vsfRCSB PDB    PDBbind261aa, >5VSF_1|Chains... at 100%
6mbpRCSB PDB    PDBbind261aa, >6MBP_1|Chains... at 100%
6mboRCSB PDB    PDBbind261aa, >6MBO_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
5vscRCSB PDB    PDBbind9HJ
Entry Information
PDB ID5vsd
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameHistone-lysine N-methyltransferase EHMT1
Ligand Name9HJ
EC.Number E.C.-.-.-.-
Resolution 1.85(Å)
Affinity (Kd/Ki/IC50)Kd=57nM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) Bioorg. Med. Chem. Vol. 25: pp. 4414-4423
Ligand Properties
Formula C20H32N5O2
Molecular Weight 374.500
Exact Mass 374.256
No. of atoms 59
No. of bonds 61
Polar Surface Area 63.95
LOGP Value 3.74      (Computed with XLOGP3)
3.22      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 7
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9H9B1  
Entrez Gene IDNCBI Entrez Gene ID: 79813  
ASDInformation of known allosteric effects of PDB entries
 
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