Browse entries in the PDBbind-CN Database

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Related entries of code: 5w8j
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4aj1RCSB PDB    PDBbind331aa, >4AJ1_1|Chains... at 94%
4aj2RCSB PDB    PDBbind331aa, >4AJ2_1|Chains... at 94%
4aj4RCSB PDB    PDBbind332aa, >4AJ4_1|Chains... at 93%
4ajeRCSB PDB    PDBbind331aa, >4AJE_1|Chains... at 94%
4ajiRCSB PDB    PDBbind331aa, >4AJI_1|Chains... at 94%
4ajkRCSB PDB    PDBbind331aa, >4AJK_1|Chains... at 94%
4ajlRCSB PDB    PDBbind331aa, >4AJL_1|Chains... at 94%
4ajnRCSB PDB    PDBbind331aa, >4AJN_1|Chains... at 94%
4ajoRCSB PDB    PDBbind331aa, >4AJO_1|Chains... at 94%
4al4RCSB PDB    PDBbind331aa, >4AL4_1|Chains... at 94%
4i8xRCSB PDB    PDBbind331aa, >4I8X_1|Chains... at 93%
4i9hRCSB PDB    PDBbind331aa, >4I9H_1|Chains... at 93%
4i9uRCSB PDB    PDBbind331aa, >4I9U_1|Chains... at 93%
4qsmRCSB PDB    PDBbind337aa, >4QSM_1|Chains... *
4qt0RCSB PDB    PDBbind337aa, >4QT0_1|Chains... at 100%
5w8hRCSB PDB    PDBbind332aa, >5W8H_1|Chains... at 99%
5w8iRCSB PDB    PDBbind332aa, >5W8I_1|Chains... at 99%
5zjfRCSB PDB    PDBbind337aa, >5ZJF_1|Chains... at 98%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
5w8hRCSB PDB    PDBbind9Y1
Entry Information
PDB ID5w8j
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameL-lactate dehydrogenase A chain
Ligand Name9Y1
EC.Number E.C.1.1.1.27
Resolution 1.55(Å)
Affinity (Kd/Ki/IC50)Kd=370nM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2017) J. Med. Chem. Vol. 60: pp. 9184-9204
Ligand Properties
Formula C20H14F2N4O5S2
Molecular Weight 492.476
Exact Mass 492.037
No. of atoms 47
No. of bonds 50
Polar Surface Area 185.02
LOGP Value 4.23      (Computed with XLOGP3)
4.70      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 7
No. of Rotatable Bonds: 6
No. of Nitrogen and Oxygen Atoms: 9
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P00338  
Entrez Gene IDNCBI Entrez Gene ID: 3939  
ASDInformation of known allosteric effects of PDB entries
 
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