Browse entries in the PDBbind-CN Database

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Related entries of code: 5wfc
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2ndfRCSB PDB    PDBbind13aa, >2NDF_2|Chain... at 100%
3iiwRCSB PDB    PDBbind11aa, >3IIW_2|Chain... at 100%
3o34RCSB PDB    PDBbind22aa, >3O34_2|Chain... at 90%
4gu0RCSB PDB    PDBbind26aa, >4GU0_2|Chains... at 96%
5dahRCSB PDB    PDBbind11aa, >5DAH_2|Chains... at 100%
5j3vRCSB PDB    PDBbind17aa, >5J3V_2|Chains... at 100%
5wvoRCSB PDB    PDBbind37aa, >5WVO_3|Chain... at 91%
5znrRCSB PDB    PDBbind17aa, >5ZNR_2|Chains... at 100%
6axjRCSB PDB    PDBbind11aa, >6AXJ_2|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID5wfc
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NamePolycomb repressive complex 2 humanizing (hm) mutations
Ligand NameA97
EC.Number E.C.-.-.-.-
Resolution 2.28(Å)
Affinity (Kd/Ki/IC50)IC50=12.5uM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) Sci Rep Vol. 8: pp. 9092-9092
Ligand Properties
Formula C31H40N7O2
Molecular Weight 542.695
Exact Mass 542.324
No. of atoms 80
No. of bonds 84
Polar Surface Area 100.35
LOGP Value 3.98      (Computed with XLOGP3)
4.92      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 9
No. of Nitrogen and Oxygen Atoms: 9
No. of Rings: 5
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): G0RYC6  G0S8H7  G0SDW4  P68431  
Entrez Gene IDNCBI Entrez Gene ID: 18254659  18257030  18259361  8350  8351  8352  8353  8354  8355  8356  8357  8358  8968  
ASDInformation of known allosteric effects of PDB entries

 
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