Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 5wj6
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3uo9RCSB PDB    PDBbind534aa, >3UO9_1|Chains... at 98%
3vozRCSB PDB    PDBbind315aa, >3VOZ_1|Chain... at 99%
3vp1RCSB PDB    PDBbind315aa, >3VP1_1|Chain... at 99%
3vp2RCSB PDB    PDBbind315aa, >3VP2_1|Chain... at 99%
3vp3RCSB PDB    PDBbind315aa, >3VP3_1|Chain... at 99%
3vp4RCSB PDB    PDBbind316aa, >3VP4_1|Chain... at 99%
4jktRCSB PDB    PDBbind479aa, >4JKT_1|Chains... at 97%
4o7dRCSB PDB    PDBbind313aa, >4O7D_1|Chain... at 99%
5fi2RCSB PDB    PDBbind539aa, >5FI2_1|Chains... *
5fi6RCSB PDB    PDBbind539aa, >5FI6_1|Chains... at 100%
5fi7RCSB PDB    PDBbind539aa, >5FI7_1|Chains... at 100%
5i94RCSB PDB    PDBbind539aa, >5I94_1|Chains... at 99%
5jyoRCSB PDB    PDBbind333aa, >5JYO_1|Chains... at 94%
5jypRCSB PDB    PDBbind333aa, >5JYP_1|Chain... at 94%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID5wj6
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Nameglutaminase C
Ligand NameB4A
EC.Number E.C.3.5.1.2
Resolution 2.45(Å)
Affinity (Kd/Ki/IC50)Kd=27nM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) J. Biol. Chem. Vol. 293: pp. 3535-3545
Ligand Properties
Formula C25H26N8O2S2
Molecular Weight 534.656
Exact Mass 534.162
No. of atoms 63
No. of bonds 67
Polar Surface Area 181.51
LOGP Value 4.04      (Computed with XLOGP3)
4.12      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 6
No. of Rotatable Bonds: 11
No. of Nitrogen and Oxygen Atoms: 10
No. of Rings: 5
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): O94925  
Entrez Gene IDNCBI Entrez Gene ID: 2744  
ASDInformation of known allosteric effects of PDB entries
 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝ｅ湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com