Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 5x9o
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3lbzRCSB PDB    PDBbind127aa, >3LBZ_1|Chains... at 96%
5h7hRCSB PDB    PDBbind141aa, >5H7H_1|Chain... at 100%
5mw2RCSB PDB    PDBbind126aa, >5MW2_1|Chain... at 96%
5mw6RCSB PDB    PDBbind126aa, >5MW6_1|Chains... at 96%
5mwdRCSB PDB    PDBbind126aa, >5MWD_1|Chain... at 96%
5n1xRCSB PDB    PDBbind118aa, >5N1X_3|Chain... at 96%
5n1zRCSB PDB    PDBbind123aa, >5N1Z_1|Chain... at 97%
5n20RCSB PDB    PDBbind123aa, >5N20_1|Chain... at 97%
5n21RCSB PDB    PDBbind122aa, >5N21_1|Chains... at 97%
5x4mRCSB PDB    PDBbind141aa, >5X4M_1|Chain... at 100%
5x4nRCSB PDB    PDBbind141aa, >5X4N_1|Chain... at 100%
5x4oRCSB PDB    PDBbind141aa, >5X4O_1|Chain... at 100%
5x4pRCSB PDB    PDBbind141aa, >5X4P_1|Chain... at 100%
5x4qRCSB PDB    PDBbind141aa, >5X4Q_1|Chain... at 100%
5x9pRCSB PDB    PDBbind141aa, >5X9P_1|Chain... at 100%
6ew6RCSB PDB    PDBbind123aa, >6EW6_1|Chain... at 96%
6ew7RCSB PDB    PDBbind122aa, >6EW7_1|Chains... at 97%
6cq1RCSB PDB    PDBbind131aa, >6CQ1_1|Chains... at 92%
6c3nRCSB PDB    PDBbind131aa, >6C3N_1|Chains... at 92%
6c3lRCSB PDB    PDBbind131aa, >6C3L_1|Chains... at 92%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID5x9o
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameB-cell lymphoma 6
Ligand Name80R
EC.Number E.C.-.-.-.-
Resolution 1.58(Å)
Affinity (Kd/Ki/IC50)Kd=5uM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) Bioorg. Med. Chem. Vol. 25: pp. 4876-4886
Ligand Properties
Formula C13H9ClN4O3
Molecular Weight 304.689
Exact Mass 304.036
No. of atoms 30
No. of bonds 32
Polar Surface Area 106.5
LOGP Value 2.56      (Computed with XLOGP3)
3.76      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P41182  
Entrez Gene IDNCBI Entrez Gene ID: 604  
ASDInformation of known allosteric effects of PDB entries
 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝ｅ湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com