Browse entries in the PDBbind-CN Database

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Related entries of code: 5xp7
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1a07RCSB PDB    PDBbind107aa, >1A07_1|Chains... at 99%
1a08RCSB PDB    PDBbind107aa, >1A08_1|Chains... at 99%
1a09RCSB PDB    PDBbind107aa, >1A09_1|Chains... at 99%
1a1bRCSB PDB    PDBbind107aa, >1A1B_1|Chains... at 99%
1a1cRCSB PDB    PDBbind107aa, >1A1C_1|Chains... at 99%
1a1eRCSB PDB    PDBbind107aa, >1A1E_1|Chains... at 99%
1is0RCSB PDB    PDBbind106aa, >1IS0_1|Chains... at 97%
1nlpRCSB PDB    PDBbind64aa, >1NLP_1|Chain... at 93%
1nzlRCSB PDB    PDBbind103aa, >1NZL_1|Chains... at 97%
1nzvRCSB PDB    PDBbind103aa, >1NZV_1|Chains... at 97%
1o41RCSB PDB    PDBbind108aa, >1O41_1|Chain... at 100%
1o42RCSB PDB    PDBbind108aa, >1O42_1|Chain... at 100%
1o43RCSB PDB    PDBbind108aa, >1O43_1|Chain... at 100%
1o44RCSB PDB    PDBbind108aa, >1O44_1|Chain... at 100%
1o45RCSB PDB    PDBbind108aa, >1O45_1|Chain... at 100%
1o46RCSB PDB    PDBbind108aa, >1O46_1|Chain... at 100%
1o47RCSB PDB    PDBbind108aa, >1O47_1|Chain... at 100%
1o48RCSB PDB    PDBbind108aa, >1O48_1|Chain... at 100%
1o49RCSB PDB    PDBbind108aa, >1O49_1|Chain... at 100%
1o4aRCSB PDB    PDBbind108aa, >1O4A_1|Chain... at 100%
1o4bRCSB PDB    PDBbind108aa, >1O4B_1|Chain... at 100%
1o4dRCSB PDB    PDBbind108aa, >1O4D_1|Chain... at 100%
1o4eRCSB PDB    PDBbind108aa, >1O4E_1|Chain... at 100%
1o4fRCSB PDB    PDBbind108aa, >1O4F_1|Chain... at 100%
1o4gRCSB PDB    PDBbind108aa, >1O4G_1|Chain... at 100%
1o4hRCSB PDB    PDBbind108aa, >1O4H_1|Chain... at 100%
1o4iRCSB PDB    PDBbind108aa, >1O4I_1|Chain... at 100%
1o4jRCSB PDB    PDBbind108aa, >1O4J_1|Chain... at 100%
1o4kRCSB PDB    PDBbind108aa, >1O4K_1|Chain... at 100%
1o4lRCSB PDB    PDBbind108aa, >1O4L_1|Chain... at 100%
1o4mRCSB PDB    PDBbind108aa, >1O4M_1|Chain... at 100%
1o4nRCSB PDB    PDBbind108aa, >1O4N_1|Chain... at 100%
1o4oRCSB PDB    PDBbind108aa, >1O4O_1|Chain... at 100%
1o4pRCSB PDB    PDBbind108aa, >1O4P_1|Chain... at 100%
1o4qRCSB PDB    PDBbind108aa, >1O4Q_1|Chain... at 100%
1o4rRCSB PDB    PDBbind108aa, >1O4R_1|Chain... at 100%
1prlRCSB PDB    PDBbind64aa, >1PRL_1|Chain... at 96%
1prmRCSB PDB    PDBbind64aa, >1PRM_1|Chain... at 96%
1rlpRCSB PDB    PDBbind64aa, >1RLP_1|Chain... at 96%
1rlqRCSB PDB    PDBbind64aa, >1RLQ_1|Chain... at 96%
1shdRCSB PDB    PDBbind107aa, >1SHD_1|Chain... at 99%
1skjRCSB PDB    PDBbind113aa, >1SKJ_1|Chain... at 90%
1y57RCSB PDB    PDBbind452aa, >1Y57_1|Chain... at 99%
2bdfRCSB PDB    PDBbind279aa, >2BDF_1|Chains... at 100%
2bdjRCSB PDB    PDBbind279aa, >2BDJ_1|Chain... at 100%
2h8hRCSB PDB    PDBbind535aa, >2H8H_1|Chain... *
2hwoRCSB PDB    PDBbind286aa, >2HWO_1|Chains... at 97%
2hwpRCSB PDB    PDBbind286aa, >2HWP_1|Chains... at 97%
2oiqRCSB PDB    PDBbind286aa, >2OIQ_1|Chains... at 98%
2qlqRCSB PDB    PDBbind286aa, >2QLQ_1|Chains... at 97%
2qq7RCSB PDB    PDBbind286aa, >2QQ7_1|Chains... at 97%
3el7RCSB PDB    PDBbind286aa, >3EL7_1|Chain... at 98%
3el8RCSB PDB    PDBbind286aa, >3EL8_1|Chains... at 98%
3f3tRCSB PDB    PDBbind286aa, >3F3T_1|Chains... at 97%
3f3uRCSB PDB    PDBbind286aa, >3F3U_1|Chains... at 97%
3f3vRCSB PDB    PDBbind286aa, >3F3V_1|Chains... at 97%
3f3wRCSB PDB    PDBbind286aa, >3F3W_1|Chains... at 97%
3g5dRCSB PDB    PDBbind286aa, >3G5D_1|Chains... at 97%
3g6gRCSB PDB    PDBbind286aa, >3G6G_1|Chains... at 98%
3g6hRCSB PDB    PDBbind286aa, >3G6H_1|Chains... at 97%
3lokRCSB PDB    PDBbind286aa, >3LOK_1|Chains... at 97%
3svvRCSB PDB    PDBbind286aa, >3SVV_1|Chains... at 97%
3u4wRCSB PDB    PDBbind275aa, >3U4W_1|Chain... at 99%
3u51RCSB PDB    PDBbind275aa, >3U51_1|Chains... at 99%
3uqfRCSB PDB    PDBbind286aa, >3UQF_1|Chains... at 98%
3uqgRCSB PDB    PDBbind286aa, >3UQG_1|Chains... at 98%
4dggRCSB PDB    PDBbind286aa, >4DGG_1|Chains... at 98%
4ficRCSB PDB    PDBbind286aa, >4FIC_1|Chains... at 98%
4hxjRCSB PDB    PDBbind60aa, >4HXJ_1|Chains... at 98%
4lggRCSB PDB    PDBbind270aa, >4LGG_1|Chains... at 98%
4lghRCSB PDB    PDBbind277aa, >4LGH_1|Chains... at 98%
4mcvRCSB PDB    PDBbind278aa, >4MCV_1|Chains... at 98%
4o2pRCSB PDB    PDBbind286aa, >4O2P_1|Chains... at 98%
4u5jRCSB PDB    PDBbind286aa, >4U5J_1|Chains... at 98%
4ybjRCSB PDB    PDBbind286aa, >4YBJ_1|Chains... at 98%
4ybkRCSB PDB    PDBbind286aa, >4YBK_1|Chain... at 98%
5bmmRCSB PDB    PDBbind286aa, >5BMM_1|Chains... at 98%
5d10RCSB PDB    PDBbind286aa, >5D10_1|Chains... at 97%
5d11RCSB PDB    PDBbind286aa, >5D11_1|Chains... at 97%
5d12RCSB PDB    PDBbind286aa, >5D12_1|Chains... at 97%
6f3fRCSB PDB    PDBbind455aa, >6F3F_1|Chain... at 98%
5tehRCSB PDB    PDBbind286aa, >5TEH_1|Chains... at 97%
5sysRCSB PDB    PDBbind286aa, >5SYS_1|Chains... at 97%
5swhRCSB PDB    PDBbind286aa, >5SWH_1|Chains... at 97%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID5xp7
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameProto-oncogene tyrosine-protein kinase Src
Ligand Name8C6
EC.Number E.C.2.7.10.2
Resolution 2.01(Å)
Affinity (Kd/Ki/IC50)Ki=0.038mM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) J. Am. Chem. Soc. Vol. 139: pp. 7701-7704
Ligand Properties
Formula C11H18ClN5O9P2
Molecular Weight 461.689
Exact Mass 461.027
No. of atoms 46
No. of bonds 48
Polar Surface Area 256.87
LOGP Value -4.28      (Computed with XLOGP3)
-1.37      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 10
No. of Rotatable Bonds: 7
No. of Nitrogen and Oxygen Atoms: 14
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P00523  
Entrez Gene IDNCBI Entrez Gene ID: 396442  
ASDInformation of known allosteric effects of PDB entries
 
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