Browse entries in the PDBbind-CN Database

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Related entries of code: 5xvk
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5yjiRCSB PDB    PDBbind284aa, >5YJI_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
5xvqRCSB PDB    PDBbind8GC

Entry Information
PDB ID5xvk
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameNicotinamide N-methyltransferase
Ligand Name8GC
EC.Number E.C.-.-.-.-
Resolution 1.88(Å)
Affinity (Kd/Ki/IC50)IC50=9uM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) Biochem. Biophys. Res. Commun. Vol. 491: pp. 416-422
Ligand Properties
Formula C7H9N2O
Molecular Weight 137.159
Exact Mass 137.071
No. of atoms 19
No. of bonds 19
Polar Surface Area 46.97
LOGP Value -0.14      (Computed with XLOGP3)
0.31      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 1
No. of Rotatable Bonds: 1
No. of Nitrogen and Oxygen Atoms: 3
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): O55239  
Entrez Gene IDNCBI Entrez Gene ID: 18113  
ASDInformation of known allosteric effects of PDB entries

 
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