Browse entries in the PDBbind-CN Database

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Related entries of code: 5xxk
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
No similar entries are found!
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1abtRCSB PDB    PDBbind12-mer
1br8RCSB PDB    PDBbind12-mer
1dkdRCSB PDB    PDBbind12-mer
1gwrRCSB PDB    PDBbind12-mer
1hgtRCSB PDB    PDBbind12-mer
1i8iRCSB PDB    PDBbind12-mer
1jplRCSB PDB    PDBbind12-mer
1jyiRCSB PDB    PDBbind12-mer
1ka7RCSB PDB    PDBbind12-mer
1lf8RCSB PDB    PDBbind12-mer
1mq1RCSB PDB    PDBbind12-mer
1mwnRCSB PDB    PDBbind12-mer
1osgRCSB PDB    PDBbind12-mer
1qweRCSB PDB    PDBbind12-mer
1qwfRCSB PDB    PDBbind12-mer
1shcRCSB PDB    PDBbind12-mer
1ujjRCSB PDB    PDBbind12-mer
1ujkRCSB PDB    PDBbind12-mer
1upkRCSB PDB    PDBbind12-mer
1w80RCSB PDB    PDBbind12-mer
1x8sRCSB PDB    PDBbind12-mer
1xb7RCSB PDB    PDBbind12-mer
1y98RCSB PDB    PDBbind12-mer
2a3iRCSB PDB    PDBbind12-mer
2bypRCSB PDB    PDBbind12-mer
2ci9RCSB PDB    PDBbind12-mer
2fx8RCSB PDB    PDBbind12-mer
2g6qRCSB PDB    PDBbind12-mer
2iv9RCSB PDB    PDBbind12-mer
2jbuRCSB PDB    PDBbind12-mer
2kffRCSB PDB    PDBbind12-mer
2kfgRCSB PDB    PDBbind12-mer
2kfhRCSB PDB    PDBbind12-mer
2ltvRCSB PDB    PDBbind12-mer
2mowRCSB PDB    PDBbind12-mer
2mwpRCSB PDB    PDBbind12-mer
2nczRCSB PDB    PDBbind12-mer
2nwnRCSB PDB    PDBbind12-mer
2ovqRCSB PDB    PDBbind12-mer
2pnxRCSB PDB    PDBbind12-mer
2pv2RCSB PDB    PDBbind12-mer
2pv3RCSB PDB    PDBbind12-mer
2qbxRCSB PDB    PDBbind12-mer
2qicRCSB PDB    PDBbind12-mer
2rolRCSB PDB    PDBbind12-mer
2v85RCSB PDB    PDBbind12-mer
2w10RCSB PDB    PDBbind12-mer
2w85RCSB PDB    PDBbind12-mer
2xzqRCSB PDB    PDBbind12-mer
2y06RCSB PDB    PDBbind12-mer
2y07RCSB PDB    PDBbind12-mer
2y1nRCSB PDB    PDBbind12-mer
2y36RCSB PDB    PDBbind12-mer
2ynrRCSB PDB    PDBbind12-mer
2ynsRCSB PDB    PDBbind12-mer
3c6wRCSB PDB    PDBbind12-mer
3cs8RCSB PDB    PDBbind12-mer
3d32RCSB PDB    PDBbind12-mer
3dowRCSB PDB    PDBbind12-mer
3ds0RCSB PDB    PDBbind12-mer
3ds1RCSB PDB    PDBbind12-mer
3ds3RCSB PDB    PDBbind12-mer
3ds4RCSB PDB    PDBbind12-mer
3eqsRCSB PDB    PDBbind12-mer
3eqyRCSB PDB    PDBbind12-mer
3ggwRCSB PDB    PDBbind12-mer
3hs8RCSB PDB    PDBbind12-mer
3hs9RCSB PDB    PDBbind12-mer
3i5rRCSB PDB    PDBbind12-mer
3iqqRCSB PDB    PDBbind12-mer
3ivqRCSB PDB    PDBbind12-mer
3iwyRCSB PDB    PDBbind12-mer
3jzoRCSB PDB    PDBbind12-mer
3jzpRCSB PDB    PDBbind12-mer
3jzqRCSB PDB    PDBbind12-mer
3jzrRCSB PDB    PDBbind12-mer
3jzsRCSB PDB    PDBbind12-mer
3k26RCSB PDB    PDBbind12-mer
3l3xRCSB PDB    PDBbind12-mer
3l3zRCSB PDB    PDBbind12-mer
3lnjRCSB PDB    PDBbind12-mer
3lnzRCSB PDB    PDBbind12-mer
3mo8RCSB PDB    PDBbind12-mer
3ob1RCSB PDB    PDBbind12-mer
3ob2RCSB PDB    PDBbind12-mer
3poaRCSB PDB    PDBbind12-mer
3shbRCSB PDB    PDBbind12-mer
3sw9RCSB PDB    PDBbind12-mer
3tpxRCSB PDB    PDBbind12-mer
3tszRCSB PDB    PDBbind12-mer
3u2qRCSB PDB    PDBbind12-mer
3uedRCSB PDB    PDBbind12-mer
3uefRCSB PDB    PDBbind12-mer
3ueoRCSB PDB    PDBbind12-mer
3uvwRCSB PDB    PDBbind12-mer
4a4cRCSB PDB    PDBbind12-mer
4b8pRCSB PDB    PDBbind12-mer
4ba3RCSB PDB    PDBbind12-mer
4cc2RCSB PDB    PDBbind12-mer
4cc3RCSB PDB    PDBbind12-mer
4cc7RCSB PDB    PDBbind12-mer
4dowRCSB PDB    PDBbind12-mer
4gaoRCSB PDB    PDBbind12-mer
4gq6RCSB PDB    PDBbind12-mer
4gw1RCSB PDB    PDBbind12-mer
4gw5RCSB PDB    PDBbind12-mer
4hy9RCSB PDB    PDBbind12-mer
4j26RCSB PDB    PDBbind12-mer
4jfxRCSB PDB    PDBbind12-mer
4jfzRCSB PDB    PDBbind12-mer
4jg0RCSB PDB    PDBbind12-mer
4jg1RCSB PDB    PDBbind12-mer
4l58RCSB PDB    PDBbind12-mer
4qh7RCSB PDB    PDBbind12-mer
4rxzRCSB PDB    PDBbind12-mer
4twtRCSB PDB    PDBbind12-mer
4u7tRCSB PDB    PDBbind12-mer
4ux9RCSB PDB    PDBbind12-mer
4w50RCSB PDB    PDBbind12-mer
4whtRCSB PDB    PDBbind12-mer
4whyRCSB PDB    PDBbind12-mer
4x8pRCSB PDB    PDBbind12-mer
4yhzRCSB PDB    PDBbind12-mer
4ym4RCSB PDB    PDBbind12-mer
4z2oRCSB PDB    PDBbind12-mer
4z2pRCSB PDB    PDBbind12-mer
4z68RCSB PDB    PDBbind12-mer
4znxRCSB PDB    PDBbind12-mer
5b56RCSB PDB    PDBbind12-mer
5d2aRCSB PDB    PDBbind12-mer
5eeqRCSB PDB    PDBbind12-mer
5esqRCSB PDB    PDBbind12-mer
5etuRCSB PDB    PDBbind12-mer
5eukRCSB PDB    PDBbind12-mer
5f88RCSB PDB    PDBbind12-mer
5ff6RCSB PDB    PDBbind12-mer
5ggpRCSB PDB    PDBbind12-mer
5gr9RCSB PDB    PDBbind12-mer
5huwRCSB PDB    PDBbind12-mer
5huyRCSB PDB    PDBbind12-mer
5hyqRCSB PDB    PDBbind12-mer
5i2iRCSB PDB    PDBbind12-mer
5icyRCSB PDB    PDBbind12-mer
5iczRCSB PDB    PDBbind12-mer
5id1RCSB PDB    PDBbind12-mer
5ih2RCSB PDB    PDBbind12-mer
5iopRCSB PDB    PDBbind12-mer
5ir1RCSB PDB    PDBbind12-mer
5itfRCSB PDB    PDBbind12-mer
5iv2RCSB PDB    PDBbind12-mer
5ivnRCSB PDB    PDBbind12-mer
5ivzRCSB PDB    PDBbind12-mer
5ixqRCSB PDB    PDBbind12-mer
5iyvRCSB PDB    PDBbind12-mer
5lgrRCSB PDB    PDBbind12-mer
5mocRCSB PDB    PDBbind12-mer
5n7xRCSB PDB    PDBbind12-mer
5n8jRCSB PDB    PDBbind12-mer
5t1kRCSB PDB    PDBbind12-mer
5t1lRCSB PDB    PDBbind12-mer
5t1mRCSB PDB    PDBbind12-mer
5tbnRCSB PDB    PDBbind12-mer
5th2RCSB PDB    PDBbind12-mer
5v1dRCSB PDB    PDBbind12-mer
5w4sRCSB PDB    PDBbind12-mer
5w5sRCSB PDB    PDBbind12-mer
5w5uRCSB PDB    PDBbind12-mer
5w6iRCSB PDB    PDBbind12-mer
5w6rRCSB PDB    PDBbind12-mer
5w6tRCSB PDB    PDBbind12-mer
5w6uRCSB PDB    PDBbind12-mer
5wleRCSB PDB    PDBbind12-mer
5wxfRCSB PDB    PDBbind12-mer
5wxoRCSB PDB    PDBbind12-mer
5xupRCSB PDB    PDBbind12-mer
5xwrRCSB PDB    PDBbind12-mer
5y1uRCSB PDB    PDBbind12-mer
5y59RCSB PDB    PDBbind12-mer
6bggRCSB PDB    PDBbind12-mer
6e83RCSB PDB    PDBbind12-mer
6f7tRCSB PDB    PDBbind12-mer
6f8gRCSB PDB    PDBbind12-mer
6rr0RCSB PDB    PDBbind12-mer
6qtrRCSB PDB    PDBbind12-mer
6qtoRCSB PDB    PDBbind12-mer
6pitRCSB PDB    PDBbind12-mer
6peuRCSB PDB    PDBbind12-mer
6o3xRCSB PDB    PDBbind12-mer
6nk0RCSB PDB    PDBbind12-mer
6mm5RCSB PDB    PDBbind12-mer
6k5tRCSB PDB    PDBbind12-mer
6k5rRCSB PDB    PDBbind12-mer
6iamRCSB PDB    PDBbind12-mer
6hy2RCSB PDB    PDBbind12-mer
6bykRCSB PDB    PDBbind12-mer
6bw4RCSB PDB    PDBbind12-mer
6bw3RCSB PDB    PDBbind12-mer
6a8gRCSB PDB    PDBbind12-mer
5zopRCSB PDB    PDBbind12-mer
Entry Information
PDB ID5xxk
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameE3 ubiquitin-protein ligase Mdm2
Ligand Name12-mer
EC.Number E.C.-.-.-.-
Resolution 1.66(Å)
Affinity (Kd/Ki/IC50)Kd=6.337nM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) PLoS ONE Vol. 12: pp. e0189379-e0189379
Ligand Properties
Formula C75H106ClN13O17
Molecular Weight 1497.170
Exact Mass 1495.750
No. of atoms 212
No. of bonds 216
Polar Surface Area 476.97
LOGP Value 7.28      (Computed with XLOGP3)
7.17      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 16
No. of Hydrogen Bond Acceptors: 17
No. of Rotatable Bonds: 29
No. of Nitrogen and Oxygen Atoms: 30
No. of Rings: 5
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q00987  
Entrez Gene IDNCBI Entrez Gene ID: 4193  
ASDInformation of known allosteric effects of PDB entries
 
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