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Related entries of code: 5y97
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
No similar entries are found!
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1gwvRCSB PDB    PDBbindLAT
1gzcRCSB PDB    PDBbindLAT
1z3vRCSB PDB    PDBbindLAT
2nn8RCSB PDB    PDBbindLAT
2y9gRCSB PDB    PDBbindLAT
2zgmRCSB PDB    PDBbindLAT
Entry Information
PDB ID5y97
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namesnake gourd seed lectin
Ligand NameLAT
EC.Number E.C.-.-.-.-
Resolution 3.05(Å)
Affinity (Kd/Ki/IC50)Kd=0.25mM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) Glycobiology Vol. 28: pp. 968-977
Ligand Properties
Formula C12H22O10
Molecular Weight 326.297
Exact Mass 326.121
No. of atoms 44
No. of bonds 45
Polar Surface Area 169.3
LOGP Value -3.68      (Computed with XLOGP3)
-4.37      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 7
No. of Hydrogen Bond Acceptors: 7
No. of Rotatable Bonds: 10
No. of Nitrogen and Oxygen Atoms: 10
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACNo matched UniProt accession number (AC) found!
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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