Browse entries in the PDBbind-CN Database

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Related entries of code: 5ydr
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1cmxRCSB PDB    PDBbind76aa, >1CMX_2|Chains... at 100%
1xd3RCSB PDB    PDBbind75aa, >1XD3_2|Chains... at 100%
2hd5RCSB PDB    PDBbind76aa, >2HD5_2|Chain... at 100%
2xbbRCSB PDB    PDBbind76aa, >2XBB_2|Chains... at 100%
2y5bRCSB PDB    PDBbind152aa, >2Y5B_2|Chains... at 99%
3dvgRCSB PDB    PDBbind79aa, >3DVG_4|Chain... at 94%
3dvnRCSB PDB    PDBbind79aa, >3DVN_4|Chains... at 94%
3kw5RCSB PDB    PDBbind75aa, >3KW5_2|Chain... at 100%
3olmRCSB PDB    PDBbind79aa, >3OLM_2|Chain... at 92%
3rulRCSB PDB    PDBbind79aa, >3RUL_1|Chains... at 94%
3znzRCSB PDB    PDBbind152aa, >3ZNZ_2|Chain... at 100%
4i6lRCSB PDB    PDBbind76aa, >4I6L_2|Chain... at 90%
4m0wRCSB PDB    PDBbind76aa, >4M0W_2|Chain... at 100%
5e6jRCSB PDB    PDBbind76aa, >5E6J_2|Chains... at 97%
5gviRCSB PDB    PDBbind72aa, >5GVI_3|Chain... at 100%
5l6hRCSB PDB    PDBbind76aa, >5L6H_2|Chains... at 96%
5l6iRCSB PDB    PDBbind76aa, >5L6I_2|Chains... at 96%
5l6jRCSB PDB    PDBbind76aa, >5L6J_2|Chains... at 96%
5lrwRCSB PDB    PDBbind76aa, >5LRW_2|Chains... at 98%
5ohpRCSB PDB    PDBbind76aa, >5OHP_2|Chains... at 100%
5yijRCSB PDB    PDBbind78aa, >5YIJ_2|Chains... at 97%
6isuRCSB PDB    PDBbind76aa, >6ISU_3|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
5wvoRCSB PDB    PDBbindDNA (cytosine-5)-methyltransferase 1, DNMT1 RFTS domain

Entry Information
PDB ID5ydr
Complex TypeProtein-Protein
PDBbind Subsetgeneral set
Protein NamePolyubiquitin-B
Ligand NameDNA (cytosine-5)-methyltransferase 1, DNMT1 RFTS domain
EC.Number E.C.-.-.-.-
Resolution 2(Å)
Affinity (Kd/Ki/IC50)Kd=26.4uM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) Nucleic Acids Res. Vol. 46: pp. 3218-3231

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P26358  P0CG47  
Entrez Gene IDNCBI Entrez Gene ID: 1786  7314  
ASDInformation of known allosteric effects of PDB entries

 
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