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Related entries of code: 5yfs
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5yftRCSB PDB    PDBbind324aa, >5YFT_1|Chains... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
5yftRCSB PDB    PDBbindRI2

Entry Information
PDB ID5yfs
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameRibose 1,5-bisphosphate isomerase PH0208
Ligand NameRI2
EC.Number E.C.-.-.-.-
Resolution 2.3(Å)
Affinity (Kd/Ki/IC50)Kd=13.8uM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) Sci Rep Vol. 8: pp. 1891-1891
Ligand Properties
Formula C5H14O11P2
Molecular Weight 312.106
Exact Mass 312.001
No. of atoms 32
No. of bonds 32
Polar Surface Area 216.71
LOGP Value -5.04      (Computed with XLOGP3)
-3.22      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 8
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 11
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): O57947  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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