Browse entries in the PDBbind-CN Database

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Related entries of code: 5yl2
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1z2bRCSB PDB    PDBbind142aa, >1Z2B_3|Chain... at 99%
3ut5RCSB PDB    PDBbind142aa, >3UT5_3|Chain... at 97%
4o2aRCSB PDB    PDBbind143aa, >4O2A_3|Chain... at 98%
4o2bRCSB PDB    PDBbind143aa, >4O2B_3|Chain... at 98%
5jcbRCSB PDB    PDBbind152aa, >5JCB_3|Chain... at 92%
5lp6RCSB PDB    PDBbind143aa, >5LP6_3|Chain... at 98%
5oskRCSB PDB    PDBbind143aa, >5OSK_3|Chain... at 98%
5xafRCSB PDB    PDBbind189aa, >5XAF_3|Chain... *
5xagRCSB PDB    PDBbind189aa, >5XAG_3|Chain... at 100%
5xiwRCSB PDB    PDBbind143aa, >5XIW_3|Chain... at 98%
5yljRCSB PDB    PDBbind143aa, >5YLJ_3|Chain... at 98%
5ylsRCSB PDB    PDBbind143aa, >5YLS_3|Chain... at 98%
6fiiRCSB PDB    PDBbind143aa, >6FII_3|Chain... at 98%
6fjfRCSB PDB    PDBbind143aa, >6FJF_3|Chain... at 98%
6fjmRCSB PDB    PDBbind143aa, >6FJM_3|Chain... at 98%
6h9bRCSB PDB    PDBbind142aa, >6H9B_3|Chain... at 97%
6hx8RCSB PDB    PDBbind143aa, >6HX8_3|Chain... at 98%
6gf3RCSB PDB    PDBbind143aa, >6GF3_4|Chain... at 98%
6f7cRCSB PDB    PDBbind143aa, >6F7C_3|Chain... at 98%
6agkRCSB PDB    PDBbind143aa, >6AGK_3|Chain... at 98%
6nngRCSB PDB    PDBbind143aa, >6NNG_3|Chain... at 98%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID5yl2
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameTubulin
Ligand Name8WU
EC.Number E.C.-.-.-.-
Resolution 2.09(Å)
Affinity (Kd/Ki/IC50)Kd=31.69uM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) J. Biol. Chem. Vol. : pp. -
Ligand Properties
Formula C22H22O5
Molecular Weight 366.407
Exact Mass 366.147
No. of atoms 49
No. of bonds 51
Polar Surface Area 64.99
LOGP Value 4.20      (Computed with XLOGP3)
4.49      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 6
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q2XVP4  P63043  E1BQ43  P02554  
Entrez Gene IDNCBI Entrez Gene ID: 733594  79423  416711  
ASDInformation of known allosteric effects of PDB entries
 
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