Browse entries in the PDBbind-CN Database

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Related entries of code: 5yof
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5h6vRCSB PDB    PDBbind52aa, >5H6V_1|Chain... at 100%
5zmqRCSB PDB    PDBbind53aa, >5ZMQ_1|Chains... at 100%
5zmsRCSB PDB    PDBbind53aa, >5ZMS_1|Chains... at 100%
5zobRCSB PDB    PDBbind53aa, >5ZOB_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
5h6vRCSB PDB    PDBbind7HS

Entry Information
PDB ID5yof
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NamebZiPro
Ligand Name7HS
EC.Number E.C.-.-.-.-
Resolution 1.51(Å)
Affinity (Kd/Ki/IC50)IC50=1.5uM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) Structure Vol. 26: pp. 555-564.e3
Ligand Properties
Formula C14H30N6O3
Molecular Weight 330.426
Exact Mass 330.238
No. of atoms 53
No. of bonds 52
Polar Surface Area 168.92
LOGP Value -0.11      (Computed with XLOGP3)
-2.10      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 14
No. of Nitrogen and Oxygen Atoms: 9
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q32ZE1  
Entrez Gene IDNCBI Entrez Gene ID: 7751225  
ASDInformation of known allosteric effects of PDB entries

 
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