Browse entries in the PDBbind-CN Database

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Related entries of code: 5yso
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1vjbRCSB PDB    PDBbind251aa, >1VJB_1|Chains... *
2e2rRCSB PDB    PDBbind244aa, >2E2R_1|Chain... at 94%
2ewpRCSB PDB    PDBbind226aa, >2EWP_1|Chains... at 100%
2p7aRCSB PDB    PDBbind251aa, >2P7A_1|Chain... at 100%
2p7gRCSB PDB    PDBbind251aa, >2P7G_1|Chain... at 100%
2p7zRCSB PDB    PDBbind251aa, >2P7Z_1|Chain... at 100%
2zasRCSB PDB    PDBbind244aa, >2ZAS_1|Chain... at 94%
6i67RCSB PDB    PDBbind241aa, >6I67_1|Chain... at 95%
6i66RCSB PDB    PDBbind241aa, >6I66_1|Chain... at 95%
6i65RCSB PDB    PDBbind241aa, >6I65_1|Chain... at 95%
6i64RCSB PDB    PDBbind241aa, >6I64_1|Chain... at 95%
6i63RCSB PDB    PDBbind237aa, >6I63_1|Chain... at 97%
6i62RCSB PDB    PDBbind237aa, >6I62_1|Chain... at 97%
6i61RCSB PDB    PDBbind241aa, >6I61_1|Chain... at 95%
6a6kRCSB PDB    PDBbind238aa, >6A6K_1|Chains... at 96%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID5yso
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameEstrogen-related receptor gamma
Ligand Name90C
EC.Number E.C.-.-.-.-
Resolution 2.5(Å)
Affinity (Kd/Ki/IC50)IC50=0.04uM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2019) Clin.Cancer Res. Vol. 25: pp. 5069-5081
Ligand Properties
Formula C30H39N2O2
Molecular Weight 459.643
Exact Mass 459.301
No. of atoms 73
No. of bonds 76
Polar Surface Area 48.14
LOGP Value 5.79      (Computed with XLOGP3)
5.83      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 11
No. of Nitrogen and Oxygen Atoms: 4
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P62508  
Entrez Gene IDNCBI Entrez Gene ID: 2104  
ASDInformation of known allosteric effects of PDB entries
 
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