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Related entries of code: 5z5f
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
No similar entries are found!
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID5z5f
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameBeta-xylosidase
Ligand NameFUB
EC.Number E.C.-.-.-.-
Resolution 2.1(Å)
Affinity (Kd/Ki/IC50)Ki=6.8mM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) PLoS ONE Vol. 13: pp. e0196358-e0196358
Ligand Properties
Formula C5H10O5
Molecular Weight 150.130
Exact Mass 150.053
No. of atoms 20
No. of bonds 20
Polar Surface Area 90.15
LOGP Value -1.97      (Computed with XLOGP3)
-2.58      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q2I2N4  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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