Browse entries in the PDBbind-CN Database

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Related entries of code: 5zk8
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5yc8RCSB PDB    PDBbind421aa, >5YC8_1|Chain... *
5zk3RCSB PDB    PDBbind421aa, >5ZK3_1|Chain... at 100%
5zkbRCSB PDB    PDBbind421aa, >5ZKB_1|Chain... at 100%
5zkcRCSB PDB    PDBbind421aa, >5ZKC_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
5yc8RCSB PDB    PDBbind3C0
5zkcRCSB PDB    PDBbind3C0

Entry Information
PDB ID5zk8
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameHuman muscarinic receptor M2
Ligand Name3C0
EC.Number E.C.-.-.-.-
Resolution 3(Å)
Affinity (Kd/Ki/IC50)Kd=1.3nM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) Nat. Chem. Biol. Vol. 14: pp. 1150-1158
Ligand Properties
Formula C18H24NO4
Molecular Weight 318.387
Exact Mass 318.171
No. of atoms 47
No. of bonds 50
Polar Surface Area 59.06
LOGP Value 1.33      (Computed with XLOGP3)
1.02      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 6
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P08172  
Entrez Gene IDNCBI Entrez Gene ID: 1129  
ASDInformation of known allosteric effects of PDB entries

 
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