Browse entries in the PDBbind-CN Database

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Related entries of code: 5zxi
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3dy6RCSB PDB    PDBbind271aa, >3DY6_1|Chains... at 100%
3gwxRCSB PDB    PDBbind271aa, >3GWX_1|Chains... at 100%
3gz9RCSB PDB    PDBbind269aa, >3GZ9_1|Chain... at 99%
3peqRCSB PDB    PDBbind271aa, >3PEQ_1|Chains... at 100%
3tkmRCSB PDB    PDBbind275aa, >3TKM_1|Chain... *
5xmxRCSB PDB    PDBbind275aa, >5XMX_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID5zxi
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NamePeroxisome proliferator-activated receptor delta
Ligand Name9LU
EC.Number E.C.-.-.-.-
Resolution 2.1(Å)
Affinity (Kd/Ki/IC50)others=0.7nM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2018) ACS Med Chem Lett Vol. 9: pp. 935-940
Ligand Properties
Formula C27H28N2O4
Molecular Weight 444.522
Exact Mass 444.205
No. of atoms 61
No. of bonds 64
Polar Surface Area 77.49
LOGP Value 6.38      (Computed with XLOGP3)
6.19      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 0
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 10
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q03181  
Entrez Gene IDNCBI Entrez Gene ID: 5467  
ASDInformation of known allosteric effects of PDB entries

 
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