Browse entries in the PDBbind-CN Database

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Related entries of code: 5zym
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
6j81RCSB PDB    PDBbind237aa, >6J81_1|Chain... at 99%
6j0oRCSB PDB    PDBbind237aa, >6J0O_1|Chain... at 99%
6if0RCSB PDB    PDBbind237aa, >6IF0_1|Chain... at 99%
6iezRCSB PDB    PDBbind237aa, >6IEZ_1|Chain... at 99%
5zylRCSB PDB    PDBbind237aa, >5ZYL_1|Chain... at 99%
5zykRCSB PDB    PDBbind237aa, >5ZYK_1|Chain... at 99%
5zyiRCSB PDB    PDBbind237aa, >5ZYI_1|Chain... at 99%
5zyhRCSB PDB    PDBbind237aa, >5ZYH_1|Chain... at 99%
5zygRCSB PDB    PDBbind237aa, >5ZYG_1|Chain... at 99%
5zyjRCSB PDB    PDBbind237aa, >5ZYJ_1|Chain... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID5zym
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameLIPID-TRANSFER PROTEIN CERT
Ligand Name9M6
EC.Number E.C.-.-.-.-
Resolution 1.9(Å)
Affinity (Kd/Ki/IC50)Kd=1.7uM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) Commun Chem Vol. : pp. -
Ligand Properties
Formula C27H29NO3S
Molecular Weight 447.589
Exact Mass 447.187
No. of atoms 61
No. of bonds 65
Polar Surface Area 75.64
LOGP Value 4.99      (Computed with XLOGP3)
6.52      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 8
No. of Nitrogen and Oxygen Atoms: 4
No. of Rings: 5
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9Y5P4  
Entrez Gene IDNCBI Entrez Gene ID: 10087  
ASDInformation of known allosteric effects of PDB entries
 
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