Browse entries in the PDBbind-CN Database

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Related entries of code: 6a6j
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5ytxRCSB PDB    PDBbind83aa, >5YTX_1|Chain... at 97%
5ytvRCSB PDB    PDBbind83aa, >5YTV_1|Chain... at 97%
5yttRCSB PDB    PDBbind83aa, >5YTT_1|Chain... at 97%
5ytsRCSB PDB    PDBbind83aa, >5YTS_1|Chain... at 97%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID6a6j
Complex TypeProtein-Nucleic Acid
PDBbind Subsetgeneral set
Protein NameZebra fish Y-box protein1 (YB-1) Cold-shock domain
Ligand Namean m5C-containing 6-mer RNA oligo
EC.Number E.C.-.-.-.-
Resolution 2.26(Å)
Affinity (Kd/Ki/IC50)Kd=223nM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) Mol.Cell Vol. 75: pp. 1188-1202.e11

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): B5DE31  
Entrez Gene IDNCBI Entrez Gene ID: 795398  
ASDInformation of known allosteric effects of PDB entries

 
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