Browse entries in the PDBbind-CN Database

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Related entries of code: 6agp
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1e96RCSB PDB    PDBbind192aa, >1E96_1|Chain... at 93%
1i4dRCSB PDB    PDBbind192aa, >1I4D_2|Chain... at 94%
1ryfRCSB PDB    PDBbind203aa, >1RYF_1|Chains... *
1ryhRCSB PDB    PDBbind203aa, >1RYH_1|Chains... at 100%
2fjuRCSB PDB    PDBbind178aa, >2FJU_1|Chain... at 99%
3suaRCSB PDB    PDBbind184aa, >3SUA_1|Chains... at 96%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID6agp
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameRas-related C3 botulinum toxin substrate 1
Ligand NameMG
EC.Number E.C.3.6.5.2
Resolution NMR
Affinity (Kd/Ki/IC50)Kd=8.9uM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference () Vol. : pp. -
Ligand Properties
Formula C10H17N5O11P2
Molecular Weight 445.216
Exact Mass 445.040
No. of atoms 45
No. of bonds 47
Polar Surface Area 286.07
LOGP Value -5.72      (Computed with XLOGP3)
-2.75      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 9
No. of Rotatable Bonds: 7
No. of Nitrogen and Oxygen Atoms: 16
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P63000  
Entrez Gene IDNCBI Entrez Gene ID: 5879  
ASDInformation of known allosteric effects of PDB entries

 
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