Browse entries in the PDBbind-CN Database

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Related entries of code: 6aji
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
184lRCSB PDB    PDBbind164aa, >184L_1|Chain... at 96%
185lRCSB PDB    PDBbind164aa, >185L_1|Chain... at 96%
186lRCSB PDB    PDBbind164aa, >186L_1|Chain... at 96%
187lRCSB PDB    PDBbind164aa, >187L_1|Chain... at 96%
188lRCSB PDB    PDBbind164aa, >188L_1|Chain... at 96%
1l83RCSB PDB    PDBbind164aa, >1L83_1|Chain... at 96%
1lgwRCSB PDB    PDBbind164aa, >1LGW_1|Chain... at 95%
1li2RCSB PDB    PDBbind164aa, >1LI2_1|Chain... at 95%
1li3RCSB PDB    PDBbind164aa, >1LI3_1|Chain... at 95%
1li6RCSB PDB    PDBbind164aa, >1LI6_1|Chain... at 95%
220lRCSB PDB    PDBbind164aa, >220L_1|Chain... at 96%
223lRCSB PDB    PDBbind164aa, >223L_1|Chain... at 95%
3runRCSB PDB    PDBbind168aa, >3RUN_1|Chain... at 95%
4w52RCSB PDB    PDBbind172aa, >4W52_1|Chain... at 94%
4w53RCSB PDB    PDBbind172aa, >4W53_1|Chain... at 94%
4w54RCSB PDB    PDBbind172aa, >4W54_1|Chain... at 94%
4w55RCSB PDB    PDBbind172aa, >4W55_1|Chain... at 94%
4w57RCSB PDB    PDBbind172aa, >4W57_1|Chain... at 94%
6ajjRCSB PDB    PDBbind943aa, >6AJJ_1|Chain... at 100%
6ajhRCSB PDB    PDBbind943aa, >6AJH_1|Chain... at 100%
6ajgRCSB PDB    PDBbind943aa, >6AJG_1|Chain... *
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID6aji
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameDrug exporters of the RND superfamily-like protein,Endolysin
Ligand NameAY6
EC.Number E.C.3.2.1.17
Resolution 2.9(Å)
Affinity (Kd/Ki/IC50)Kd=29.5uM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference () Vol. : pp. -
Ligand Properties
Formula C22H22Cl3N4O
Molecular Weight 464.795
Exact Mass 463.086
No. of atoms 52
No. of bonds 55
Polar Surface Area 51.36
LOGP Value 6.49      (Computed with XLOGP3)
6.48      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): A0QP27  D9IEF7  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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